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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10001306 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55791 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (55.56%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → unclassified Chaetothyriales → Chaetothyriales sp. CBS 134916 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000746 | Metagenome | 908 | Y |
| F002220 | Metagenome | 581 | Y |
| F002793 | Metagenome | 529 | Y |
| F017572 | Metagenome | 240 | Y |
| F021494 | Metagenome | 218 | Y |
| F024756 | Metagenome | 204 | Y |
| F029000 | Metagenome | 189 | Y |
| F056201 | Metagenome | 137 | Y |
| F065308 | Metagenome | 127 | Y |
| F071034 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_100013061 | F029000 | N/A | VVNRLIKMRYIIPMDLINIILVAKYFVKHVFKLHRLPNLIISNYRSQFILDF |
| Ga0307507_1000130610 | F065308 | GAG | MSLEKETVLSNVVVAPPKSPLGSSSFSNPFLILPNLLSSNISIPFL |
| Ga0307507_1000130614 | F002793 | N/A | MDIIPLVDNLEILGIFKDKNKEEGDGVINSLSIML |
| Ga0307507_1000130617 | F056201 | N/A | MAPSRSIELRGLNTLTRTIPYGRMPRWIIVVGLPREYLSIAYKGKEIN |
| Ga0307507_1000130619 | F071034 | N/A | VHCVVGETLRYFTTLVAVPAIKISFYLRISYLFSSFFIVKTIEPNLVYKLCLFTLDKIYLGSPYISIGLKVLISSFRSLEPPSPRKGRVGTL |
| Ga0307507_100013062 | F024756 | GGA | MLIYSVAYYIIVGESAGTNGLKRLMLYLGSIIVVGGIEISDLYKTFLDLLL |
| Ga0307507_100013065 | F021494 | N/A | MSKSIIISGSSPNLTSRLYALYGSAANIIFAALSLILNCPSLKLAVDIHRGLPTGRPLPYIPYNPCVPYNPYVPVRSGNITRRRFWPVKA |
| Ga0307507_100013066 | F002220 | AGGA | VHLLKSNSIIKLSFSFSFTIRFAFTNLSSLRAENWLSPKIIILLVYMLMILNGVPIVVIRKHGLNIEVVIKSFSL |
| Ga0307507_100013067 | F000746 | N/A | MVAVVGNIVKGIININYKAIMEVLIEVYFKVITKRSTIFIRSQIAS |
| Ga0307507_100013069 | F017572 | N/A | MLKPAHRNIKPLVYKADIYRGQEEDKWQVLKIIGYKDVDNKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |