Scaffold Ga0307507_10001298

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001298
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56011
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F003725	Metagenome	471	Y
F032886	Metagenome	178	Y
F037003	Metagenome	168	Y
F038017	Metagenome	166	Y
F084969	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000129814	F003725	N/A	MSSIAKERMEMLINLYNYLKSTAKLVQERIKRYYNAKRSKGPDLKEGDKV
Ga0307507_1000129816	F038017	GAG	VVKLTRYRFKLKDKDKLRVNLSHLAHYMLLWIAYMDDIYNMHRTLKDKNWKYLVRIYWAPEEK
Ga0307507_1000129817	F032886	N/A	MESEYLLINSNKGENEANWEHLNLNNAIEAETETTIERGLVMGIITPLDTISIAL
Ga0307507_1000129818	F084969	AGAAG	MLLKAPVTLTPIAAITLGTGTDTSIKDTNLQLVTVRQL
Ga0307507_1000129819	F000630	GGAG	MGVKGIEADLGKGNLSYSIGNAMGGKYPRAPRGPNKGRKYNSNTLKNRNNRTKRLASLGRCPSG
Ga0307507_100012982	F037003	AGGA	MVEGEIKKYAIKDKTIEETVEVKRNYLSVLAMHYSRTTPSTERARKDIL
Ga0307507_100012986	F003725	GGAG	MNLYIDLIETAKLVQERIKRYYNAKRSKGPDLKEGDKV