Scaffold Ga0307507_10001289

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001289
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56237
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F019458	Metagenome	229	Y
F032886	Metagenome	178	Y
F044237	Metagenome	154	Y
F084969	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000128913	F032886	N/A	MTIELEYLLINSNEEEKEANWEHLNLNNATEAETKTTTERGLVTGIITPLDTISITL
Ga0307507_1000128914	F044237	N/A	MYKLNLLAKIKIYPIQYIAILELVHRNIKLLVYKVDTYKEQEEDK
Ga0307507_1000128916	F084969	N/A	MLLKALIIILSTAAITLGLGGDTSIRDTDLQLVIVG
Ga0307507_100012894	F019458	N/A	MLHFITKLDIFNELKESSAFSFNNRYLANVFYGIIPDTRAAGVSIAGEP
Ga0307507_100012895	F000746	N/A	MIITRLIKYMVAVVGNTEEGIINVDYKVTVEVLIEVYFKVIARRSATFVRSQSAG
Ga0307507_100012899	F084969	N/A	MPLKVLVITPSIVAITLGLGGDTSIRDTNSQLIMVG