Scaffold Ga0307507_10001240

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001240
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57000
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003457	Metagenome	485	Y
F017572	Metagenome	240	Y
F032490	Metagenome	179	Y
F038927	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100012401	F003457	N/A	VAGLVCFFSAKAFLILAIVTVKIMYSGFLASYTSGVALIMXISKVLSKLKSSLVSYVVSYLGLGLVLGIELVLDLGLGSLSILFIVEYQFF
Ga0307507_1000124012	F038927	GGA	MIADGLTKALPKQRFQSFVNMIGMVDIKERLDEEKQLEDLREKVRARRKDLDEIMVQLTH
Ga0307507_100012402	F017572	N/A	MLEPVYGNIKPPVYKADTYRGQEEDKWQVLKVISYKDVDNKT
Ga0307507_100012408	F032490	N/A	MLNLKNNPIPILNPRRQLILGGFNLLTIALTPKGKPSGLKDYNNLNKVDINNILSFINYITTDK