NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001211

Scaffold Ga0307507_10001211


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001211 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57502
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F006298Metagenome376Y
F029000Metagenome189Y
F035578Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000121113F002793N/AMDITPLVDNLEMLGIFKDKDKEEGDSFMDSLSTIL
Ga0307507_100012114F029000N/AMRYIIPMDLINIILVAEYFVKYVFKLHRLSNTIVSNRGSQFVLDF
Ga0307507_100012116F006298N/AMEYRLVIKDSNSLCAIYLTILSKVLVRKVVLNFHIYKELFSLINLTLKIFFAFILNQEALEVGYSNLTISNILCALAKLIICLLLSVKRVPS
Ga0307507_100012117F035578GGAVAGVGDMAEGIININYKAIVEVLIEVYLKIINRRNAMFIRS

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