Scaffold Ga0307507_10001189

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001189
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57948
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004318	Metagenome / Metatranscriptome	443	Y
F020829	Metagenome	221	Y
F024756	Metagenome	204	Y
F041034	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000118914	F024756	GGA	MPIYSVAHCIIAGEFAGTNSLKYLVPYLESVMAAGKTEISNLYKTFLDLLL
Ga0307507_1000118918	F020829	AGGA	MPLVSSKLITNIMFSICGTPLTLGLYILIICTSPLYVWIIITIISRLTAYYNYKDRLTALLIIKHIYIAAFGLYRSWNP
Ga0307507_1000118919	F041034	N/A	VDISRNLILVKFGRILGSVELGGLFRYRADVSRNSRLVDSNGFFRFRFRV
Ga0307507_1000118920	F004318	N/A	MSKVLSEFKLSLVSYIIYYLVLGLVLGTELVLNLGLGSLSIHFIVEY