Scaffold Ga0307507_10001138

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001138
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58939
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004663	Metagenome	428	Y
F027375	Metagenome	194	Y
F038017	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100011381	F038017	N/A	VVRLTRYRFKLKNKNKLRVNLKYIAYYILSWIACVDNIYNIYRAPKDKNWKYLVKIY
Ga0307507_1000113814	F038017	AGCAG	VVRLTRYKFKLKDKDKLRVDPKYAAYYILLWIAYVDDTCNMYRALKDKNRKYLVRIY
Ga0307507_100011386	F004663	AGGA	MGVLEKSRLGNINKKESLKNKLPKGDLRGAIAKLLKVISLAKKKLVLLLPSLDRPY
Ga0307507_100011388	F027375	N/A	MVPLLDIIPLGVLNKSHHFKNRSASSTTIIVIITAKYLKNFVYLLIITRIALATSPVLILVGDKPIIKSIVNSNMGPCGIESTNNLLYRRCLDIYTL