Scaffold Ga0307507_10001136

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001136
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59033
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004318	Metagenome / Metatranscriptome	443	Y
F017572	Metagenome	240	Y
F029000	Metagenome	189	Y
F060493	Metagenome	132	Y
F082146	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100011361	F004318	N/A	MSKVLSKLRLFLVSYIVSYLALGLVLSIELVLDLGLGSLSVFFIVKY
Ga0307507_1000113610	F029000	N/A	MRHMISMDSINVILVAKYFVKHVFKLHGLSNTIVSNYKS
Ga0307507_1000113621	F017572	N/A	MLEPAHGNIKSLVYKADIYRGQKEDKWQVLKIISYKNIDDEM
Ga0307507_1000113622	F060493	N/A	MRKDFVISMLSLDISSAYNNIPYKRLLYILRVKGFPE
Ga0307507_100011365	F082146	N/A	MFYVSLLQPLKDNPITYKVPLLLSIIVNNGNGSYFINLINNI