Scaffold Ga0307507_10001113

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001113
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59652
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F014479	Metagenome / Metatranscriptome	262	Y
F020829	Metagenome	221	Y
F056213	Metagenome	137	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000111312	F056213	N/A	VDFGIRHSISLYCLLITFAQALRAPSRSILIREVFSLGLRDLIRLLISAELF
Ga0307507_100011132	F020829	GAGG	MSPSRIDFIPLVSSKLITNIIFSIYGTPLTLGLYILIIYIGPLYIWIIITTISRLTVCYNYKNRLIALLIIKHTLIAAFSLYRS
Ga0307507_100011133	F000630	GGAG	MGVKGIEVDLGKGNLSYSIGNAMGGKYLRALRGPNKGRKYNSNTFKDRNNRTKRLALLGGCPSR
Ga0307507_100011134	F081096	N/A	MHIYRGGYRGNIGQLDEDLTVRDIGQLIKGGDISLVSRRGESRLSGIGPSVSIAPLLQDTVGLL
Ga0307507_100011136	F014479	GGAGG	LLSNSIVTIIEGVCVFLSVASNRRCVRVFKLLVHLGIGARSAVLPRGLYYRNLLLLEGPFCLSVTAFYKVFVEFLFRLL
Ga0307507_100011139	F000247	AGG	VQTNIINVALSYKRTSRTEVAHTNCLASSLNIFVDKTLVPSSGVPFAYLSIDRKLYYSGGLSLNKSIDPTNTSL