Scaffold Ga0307507_10001009

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001009
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62759
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F032105	Metagenome	180	Y
F066630	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000100913	F066630	N/A	MLLVAGTENYNILLLTQKGLKAATRWLIGQNMLDQFWVIKEIAIESKGVSNRRPLITLQK
Ga0307507_1000100914	F066630	N/A	MLSVAGIENYNTLLLIQKGLKAATQWLISQNVLDQFQVAKEIVIESKGASNRRPLITLQE
Ga0307507_1000100915	F000630	GAG	MGVKGIEVDLGKGNLSYSIGNAIGGKYPRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSR
Ga0307507_100010092	F032105	GGA	MDAIITIKVLRPKPVRIINILKENVLSLTIIADKILLKTIKVTISNCLIYIPKVIKLFFKPLPPPLIEPYQ
Ga0307507_100010094	F000630	GAG	MGVKGIEAVLGKRNLSYSMVNAIGGKHLRALRRPNKGRKYNGNTLKNRNNRTKRLALLGRYPSR