NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001009

Scaffold Ga0307507_10001009


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001009 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62759
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F032105Metagenome180Y
F066630Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000100913F066630N/AMLLVAGTENYNILLLTQKGLKAATRWLIGQNMLDQFWVIKEIAIESKGVSNRRPLITLQK
Ga0307507_1000100914F066630N/AMLSVAGIENYNTLLLIQKGLKAATQWLISQNVLDQFQVAKEIVIESKGASNRRPLITLQE
Ga0307507_1000100915F000630GAGMGVKGIEVDLGKGNLSYSIGNAIGGKYPRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSR
Ga0307507_100010092F032105GGAMDAIITIKVLRPKPVRIINILKENVLSLTIIADKILLKTIKVTISNCLIYIPKVIKLFFKPLPPPLIEPYQ
Ga0307507_100010094F000630GAGMGVKGIEAVLGKRNLSYSMVNAIGGKHLRALRRPNKGRKYNGNTLKNRNNRTKRLALLGRYPSR

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