Scaffold Ga0307507_10000987

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000987
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63137
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F002793	Metagenome	529	Y
F015182	Metagenome	256	Y
F016500	Metagenome	246	Y
F019458	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000098710	F015182	N/A	MASSCVTKAISDFFKKIFLVFSVVLGKDSSIFLEFNIELIK
Ga0307507_1000098714	F002793	N/A	MDIIPLVNNLEILGIFKDKDKKKGDSIIDALSIIL
Ga0307507_1000098718	F019458	N/A	MKLDIFNELKESSAFSFNNRYLAYVFYSIMPDIGAAGVSIVGEP
Ga0307507_1000098719	F000746	GGA	MVAVVGNTEEGTINVNYKATVEVPVEVYFEVIARRSAMFVRSQITS
Ga0307507_100009877	F016500	GGA	MVEVIEAKKGLDAFYSIRGFLVMYYLNLFRVNFNSFRANNKPKVLYSFYSKFTFLNINL