Scaffold Ga0307507_10000964

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000964
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63979
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002793	Metagenome	529	Y
F008599	Metagenome	330	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000096410	F009949	AGG	MGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLALLGRYPSG
Ga0307507_1000096412	F008599	AGTAG	MGLLYRQKEHLYLLIIILGDLIAYGGGIINLKIGLI
Ga0307507_1000096419	F002793	N/A	MDIIPLVDDLEILGIFKDEDKEEGDSVTDALNTML
Ga0307507_1000096422	F014479	N/A	VGPEGFQLLSGSVATVIEGVYVFLHVVSNHRYIRVFELLAHLGVRARSAVLPRGLYCRNLSLLEGPSCLSATAFYKVFMEFPFRLSRDF
Ga0307507_1000096425	F000247	N/A	MHIALNYKRTPRTEVARTSYLTSSLNIFTGKTPVPSSNILFAHPFVDRKLYYNSSLSLNKSIDLTSTGL