Scaffold Ga0307507_10000925

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000925
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65406
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F004318	Metagenome / Metatranscriptome	443	Y
F032886	Metagenome	178	Y
F038017	Metagenome	166	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000092513	F000630	N/A	MLERYIGVKGIEANLGKRNLSYSMVSAIGGKYLRALRRPNKGRKYNGNTLKNRNNRTKRLDLLGRYSSR
Ga0307507_1000092514	F004318	N/A	VLSELKLSLVSYIVSYLSLGLGIELVLDLGLGSLSIFFIVEYQFF
Ga0307507_100009252	F038017	GAG	VVRLTRYRFKLKDKDKLRVNPKHIAYYTLSWIAYMDNIYNIYRAPKDKNQKYLIRIY
Ga0307507_100009255	F000630	GAG	MGVKGIEANLGKRNLSYSIVNAIGGKYLRALRRPNKGRKYNSNTLKNRNNRTKRLALLGRCSSK
Ga0307507_100009256	F032886	N/A	MELEYLLINSNKDKKEANWGYLNLNNAIEVETKTTTERGSVTGIIILLDTASIAL
Ga0307507_100009257	F056201	N/A	MAPNKSIELKGPNTLTRKIPYGRIPRGITVMELSREHLSMAYKGKEIN