Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000907 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65870
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (60.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

65870

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (60.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F003457	Metagenome	485	Y
F006298	Metagenome	376	Y
F021494	Metagenome	218	Y
F041034	Metagenome	160	Y
F056213	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000090711	F021494	AGG	VSYIPISASISESVIVSSSSPSLTGRLYALYGLVANIRFAAFSLILNYPGLKLTIAVYRGLPIGRPLPYVPYNPCVPI
Ga0307507_1000090720	F006298	N/A	MECRLVIKNSDGLYTVYLTILGKVLVGRVVLNFYIYKELFGLVNLTLKIFFAFILNQEALKVGYSNLLVSNISCTLAKLIICLFLSVKRVPS
Ga0307507_100009073	F056213	N/A	VDFSVRRSISLYRLLIMFMQALRAPSRSIPIREVFSLGLRDLIRLLTSAKSFQPISFA
Ga0307507_100009074	F041034	GGA	VEFSRFLRLVELGGLFKYRVNVGRNFRLVDSGGCFRFRFRV
Ga0307507_100009075	F003457	GGCGG	VCFFSTKAFLISAIITVKIIYSSFLASYTSGVALIMWIFKVLSELKSSLVSYVVSYLGLGLVLGTESVLDLGLGSLGILFIVKYQFF
Ga0307507_100009077	F006298	N/A	MERRLVVKDSNGLYAIYLTILGKVLVGRVVLNFYIYKELFSLVNLTLKIFFAFILNQEALEVGCSNLIISNILYALAKLIICLLLSVKRVPS
Ga0307507_100009078	F002220	AGG	MHPLKSNSVVKLSFSFGFAMRFAFTSLSFLRAENWSSPKIIILLVCMLIILNRVPVVVIRKQGLNVEVVIKSFSLWCLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000907

Overview

Ecosystem & Geography

Associated Families

Sequences