Scaffold Ga0307507_10000872

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000872
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66947
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002220	Metagenome	581	Y
F003457	Metagenome	485	Y
F014479	Metagenome / Metatranscriptome	262	Y
F041034	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000087215	F003457	GGTGG	VAGLVCFFGAKAFLISAIVIAKIVCLGFLASYTNRVAPIMWISKVLSELRLSLVSYMVSYSGLSSVLGIELVLDLGLGSLSILFIVEY
Ga0307507_1000087216	F014479	N/A	VGPEGFWLLFSSVTAVIEGVYVFLSVAGNRRYARVFELLVHLGIRAYLAVLPRGLYCRNLLLLEGPSYLKATAFYRVSV
Ga0307507_100008724	F014479	GGA	LSLALILLISLGRAKGVLVTSSSIISIIEGVYIFLSGNYKCVRVFKLLAYLGIRARLAVLSRGLYCHNLSLLEEPFCLNATAFYKVFMEFLFRLLRDFKGEWWM
Ga0307507_100008725	F002220	GAG	MVKLSFSFSFTIRFAFTSLSSLRAKNWSSPKIIILLVYMPIILNRVPIVIIRKQGLNIEVVIKSFSL
Ga0307507_100008728	F041034	AGG	VDVSGILILVEFGGILELVELGGLFGYKVDVSGNFRRVDSGGFFRF
Ga0307507_100008729	F000247	AGG	VYTYIICVALNYKHTLYTKVAHTNYLASSLNIFISITPVPSYSILFTHLFINKKLYYNSSLSLNKSIDLTSTGL