Scaffold Ga0307507_10000864

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000864
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67287
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F003725	Metagenome	471	Y
F037003	Metagenome	168	Y
F044237	Metagenome	154	Y
F078050	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000086410	F044237	GAG	LLTYKLKLLARIRIYLIQHIAILEPVYGNVKPPVYKADIYRGQEEDK
Ga0307507_1000086415	F002220	AGG	VYLLKSNGVIKLSFFFGFAIRFAFTNSSSLRAKNWSSPKIIILLVYMPTILNRVPIVIIRKHRLNIKVVIKSFSL
Ga0307507_1000086416	F000746	AGTAGG	MAEGIINNYKAKVEVLVEVYFKVITKRSTMFVRNQITS
Ga0307507_1000086417	F037003	AGGA	MVEEKTKEYITKDKTTKETVKVKRNHLSILAMHHSRTIPLTERAYKDIL
Ga0307507_1000086418	F078050	N/A	MVDIKERLNKEKQLEDLREKVRARRKDSDKIIVQLTH
Ga0307507_100008649	F003725	N/A	METLINLYIDLKETAKLVQERIKRYYNTKRSKGPDLKEGDKI