Scaffold Ga0307507_10000852

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000852
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67826
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Massarineae → Periconiaceae → Periconia → Periconia macrospinosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002793	Metagenome	529	Y
F008074	Metagenome	339	Y
F017572	Metagenome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100008521	F008074	N/A	IFKGKLKSARGLLVYLAVIVVLYKMLNCLNLNFIACSLKNPKQLVNG
Ga0307507_1000085210	F000630	GGAG	MGVKGIEVDLGKGNLSHSIGNTMGGKYLRALKGPNKDRKYNGNTLKDRNNRTKRLALLGGCSSR
Ga0307507_100008522	F000746	GGA	MVAVVGNMAKGTINDYKVKVEVLMEVHSKVIARRSAMFIRN
Ga0307507_100008524	F002793	N/A	MDIIPLVDDLEILGIFKDKDKKEGDSVTDSLSIML
Ga0307507_100008525	F017572	N/A	MLKPAYRNIKLLVYKVDIYRGQKEDKWQVLKIISYKDIDNKTWYKVK