NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000830

Scaffold Ga0307507_10000830


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000830 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68496
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F005943Metagenome385Y
F007161Metagenome356Y
F020829Metagenome221Y
F021494Metagenome218Y
F039539Metagenome163Y
F091119Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000083011F000630GAGMGVKGIEVDLGKGNLSHSIGNAIGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGGCSSR
Ga0307507_100008302F005943GGAMLQNGGNGYRVYVFKESIKRCAIDYKGRGRKEVIYPHVADVSCTRGIRKSTGLSYGGPCS
Ga0307507_1000083023F039539AGGAVDLLEDNTPVELNKLLTLDFKKFIKLKKGLTNEELRKLLPKRYHNFINMCLQKGADILPP
Ga0307507_1000083027F021494GAGVFCIPTSASISKSVIISSSSPGLTSQLYALYGLAINIRFAAFSLILNYPGFKLAIAVHGGLPIGRPLPYVPCDPCVPIWSGNITRRRF
Ga0307507_1000083028F020829GAGGMSPNRIDSMPLVSSKLITNIIFSVYGTPLTLGLYILIIYTSPLYIWIIITIISRLTAYYNHKDRLTALLIIKHTYIAAFGSYRSWNP
Ga0307507_100008303F007161AGCAGVPYYLVNGCKSDRGIVLKLGLKVVLGVPYSLTKEVKHFGFFRKEIVVVNAELSLYLNPPIFKGRVYPVR
Ga0307507_100008308F091119AGGMSRNAGNGYKAYVFGESIRRYAIDRKGQGRKEVIYPRVANISCT
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Institute for Fundamental Biomedical Research
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