Scaffold Ga0307507_10000825

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000825
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68684
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F008074	Metagenome	339	Y
F035578	Metagenome	171	Y
F065308	Metagenome	127	Y
F074608	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000082510	F008074	GAGG	LEYWLATKIYNVNNNIEVKVIVIFKGKLKSARGFLVYLAVMAVLYKMLNHLSLNFVTYLLKNLK
Ga0307507_1000082511	F035578	GGA	MVARVGDIAEGIININYKAIIEVLVEVYLKTINKRNTIFIRSQIAS
Ga0307507_1000082517	F008074	GAG	LEYWLAAEIYNVNNDIEVEVVVIFKGELKLARGLLVYLVVMVVLYKMFNCLSLDFITCLLKNPK
Ga0307507_1000082518	F074608	N/A	MERRLVIKDSNGLCAIYLTILGKVLVGRVVLNFYIYKELFGLVNLTLKIFFAFILN
Ga0307507_100008256	F003725	GGAG	MNLYIDLKETAKLVQEQIKRYYNAKRFKGPDLKEGDKV
Ga0307507_100008257	F065308	AGGAG	VEQGLQELSDEKTDSLLTERETTPNTLVVNPLGSPLGNSFFGNPSLLILPNPFSSDTSIPFP