NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000816

Scaffold Ga0307507_10000816


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000816 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69006
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F005943Metagenome385Y
F006298Metagenome376Y
F009949Metagenome310Y
F024756Metagenome204Y
F027375Metagenome194Y
F032535Metagenome179Y
F037003Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100008161F005943AGGMSRDGGNGYKAYVFEESTRRYAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYRGPCGGVP
Ga0307507_1000081610F002220AGGMHLLKSNGVIKLSFSFGFAIRFTFTSSSSLRAKNWSSPKIIILLVCMPIILNRVPVVVIRKQGLNIKVVIKSFSL
Ga0307507_1000081612F006298N/AMEHRLVIKNSNGLCAIYLTILSKVLVRRVVLNFYIYKELFNLINLTLKVFYAFILNQEALEVGHSDFIISNVSYTLTELVICLFSLIKGVSS
Ga0307507_1000081614F009949AGGMGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGRCLSR
Ga0307507_1000081617F032535N/AMARKPIGAIAIRWHKILGYIGPNAIAQLPKYVISVELTEFETNERAPLKIECKVYLLAKHMQQIS
Ga0307507_100008162F002220GAGMLITSIFLPWPFWRKVIEFLFRERMHPLKSNSVVKLSFSFSFAIRFAFTSFSSLRAENWLSSKIIILLVYMLIILNGVPIVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000081620F037003GAGMEETRKERMVKEEIKEYAIKDKTTKETVEVKRNYLSILAMHYSRTTPLTEKAYKDIL
Ga0307507_100008168F024756GGAMSIYSMVYYITAGESAGTNSLKRLISRLGFIMVVGKIEASNLYKTFLDLLL
Ga0307507_100008169F027375N/AVLNKSYRFKNRSASSAAVIVIIIAKYPKNFIYLLIITRIALATSLVFILVGGKPIIKSIISSNIGPYKIGSTNNLLYRQYLNIYTLWHVLYLNT

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