Scaffold Ga0307507_10000816

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000816
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69006
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F005943	Metagenome	385	Y
F006298	Metagenome	376	Y
F009949	Metagenome	310	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y
F032535	Metagenome	179	Y
F037003	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100008161	F005943	AGG	MSRDGGNGYKAYVFEESTRRYAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYRGPCGGVP
Ga0307507_1000081610	F002220	AGG	MHLLKSNGVIKLSFSFGFAIRFTFTSSSSLRAKNWSSPKIIILLVCMPIILNRVPVVVIRKQGLNIKVVIKSFSL
Ga0307507_1000081612	F006298	N/A	MEHRLVIKNSNGLCAIYLTILSKVLVRRVVLNFYIYKELFNLINLTLKVFYAFILNQEALEVGHSDFIISNVSYTLTELVICLFSLIKGVSS
Ga0307507_1000081614	F009949	AGG	MGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGRCLSR
Ga0307507_1000081617	F032535	N/A	MARKPIGAIAIRWHKILGYIGPNAIAQLPKYVISVELTEFETNERAPLKIECKVYLLAKHMQQIS
Ga0307507_100008162	F002220	GAG	MLITSIFLPWPFWRKVIEFLFRERMHPLKSNSVVKLSFSFSFAIRFAFTSFSSLRAENWLSSKIIILLVYMLIILNGVPIVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000081620	F037003	GAG	MEETRKERMVKEEIKEYAIKDKTTKETVEVKRNYLSILAMHYSRTTPLTEKAYKDIL
Ga0307507_100008168	F024756	GGA	MSIYSMVYYITAGESAGTNSLKRLISRLGFIMVVGKIEASNLYKTFLDLLL
Ga0307507_100008169	F027375	N/A	VLNKSYRFKNRSASSAAVIVIIIAKYPKNFIYLLIITRIALATSLVFILVGGKPIIKSIISSNIGPYKIGSTNNLLYRQYLNIYTLWHVLYLNT