Scaffold Ga0307507_10000814

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000814
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69031
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F007022	Metagenome	359	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y
F021494	Metagenome	218	Y
F027375	Metagenome	194	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000081413	F021494	GAG	VSCVPTSASIFKSVIISSSSPNLTSQLYALYGLAINVIFTTLSLIFNCLGLKLTIAVYRGLPIGRPLPYVPYNPYIPI
Ga0307507_1000081414	F027375	N/A	VLNKSHHSKNRSTSFAAVIIIIIAKYPKNFVYLLTITKIMLATFLVLILVGGKPIIKSIINSDIGPYRIKSTNNSLYR
Ga0307507_1000081416	F000630	GGA	MLERRIGVKGIKADLDKRNPSHGMVNAIGGKYLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCPSKQPKI
Ga0307507_1000081420	F007022	N/A	MVTCFNYGKDSYFTTSCPELKDMGNIKEIEEEETSNKSGKKEP
Ga0307507_100008144	F009949	AGG	MGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGRYSSR
Ga0307507_100008146	F078226	N/A	MLDTDANKNTNNNNSKEELEDPNGYYLTLFGTLTIDKATSISVELANKAYAYLFTVTSIEPTMETDPFNYNTTTAALRYTSTVFMGIMINTSALKKFMAGYGQF
Ga0307507_100008147	F014479	GGAGG	LLSSGITSVIEGVCVFLSGDRRCARVFKLLAHLGVRAHLAVLPRGLYYRNLSLSEGPSCLNATAFHKVFVEFPFRSSRDFEGG
Ga0307507_100008148	F000247	N/A	MRVALNYRYTLYTEVAYTNYLTGSLNTFASTTPVPSSGVPFTRPFIDGKLYYNSGLSLNKSIDPTSTGL