Scaffold Ga0307507_10000758

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000758
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71119
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F017572	Metagenome	240	Y
F027375	Metagenome	194	Y
F039539	Metagenome	163	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000075810	F017572	N/A	MLEPAHGDIKPPVYKADTYKGQEEDKWQVLKIISYKDVDDET
Ga0307507_1000075816	F039539	AGGA	VDLLEDDTPIELNKLLTLDFKKFIKLKKGLTNKELYKLLPKRYHDFINICL
Ga0307507_1000075823	F027375	N/A	MVPLSDTIPLSVLNRSHRFKNRSASSATVIVIKTVKYPKNFVYLLIITRIALATSLVLILVGGKPIIKSIINSDIGPYRIGSTDNLLYRQYLGIYTLWHVLYLNT
Ga0307507_100007586	F002555	AGTAG	MLGIFKNEDKEEGDSITDSLSTVLQLLGEELEEASWLI
Ga0307507_100007587	F017572	N/A	MLEPAYGDIKPLVYKVDMYRGQEEDKWQVLKIISYKDVDNET
Ga0307507_100007588	F056201	N/A	MAPSRSTELRGPNTLTRKIPYGRMPKRIIVVELFREYLSIAHRGKEIN