Scaffold Ga0307507_10000742

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000742
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71864
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F007022	Metagenome	359	Y
F019457	Metagenome	229	Y
F037003	Metagenome	168	Y
F060493	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000074212	F037003	GAG	MARGAEQSAMEEIRKKRTVEGETKEYATGDETTETVEVKRNHLSVPAMHRSRTTPSTERARKDIL
Ga0307507_1000074214	F060493	N/A	MRRDFIVLILNLDISGAYNNIPYKCLLYILSAKGFLEWII
Ga0307507_1000074218	F019457	N/A	MQTNNIIILGDDLFLALKEDKLVKVNLIAKLKEKLNLITLLLFNRCTLSLNKDSIALRQK
Ga0307507_100007422	F007022	N/A	MVIYFNYGKDSYFTISYLEPKDIGNIKEIKEEEMSNKLGKEEP
Ga0307507_100007425	F002555	AGTAG	MLGIFKDKDKEEGDSITDSLSTILXLLREELEEASWLI