NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000742

Scaffold Ga0307507_10000742


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000742 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71864
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F007022Metagenome359Y
F019457Metagenome229Y
F037003Metagenome168Y
F060493Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000074212F037003GAGMARGAEQSAMEEIRKKRTVEGETKEYATGDETTETVEVKRNHLSVPAMHRSRTTPSTERARKDIL
Ga0307507_1000074214F060493N/AMRRDFIVLILNLDISGAYNNIPYKCLLYILSAKGFLEWII
Ga0307507_1000074218F019457N/AMQTNNIIILGDDLFLALKEDKLVKVNLIAKLKEKLNLITLLLFNRCTLSLNKDSIALRQK
Ga0307507_100007422F007022N/AMVIYFNYGKDSYFTISYLEPKDIGNIKEIKEEEMSNKLGKEEP
Ga0307507_100007425F002555AGTAGMLGIFKDKDKEEGDSITDSLSTILXLLREELEEASWLI

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