NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000724

Scaffold Ga0307507_10000724


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000724 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72457
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (54.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041673Metagenome159Y
F050242Metagenome145Y
F071965Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000072411F050242GGAMRLCVPAGTAKDVGHFSLSSREVVYINFELILQLKLLIVKHRVSSVCKQ
Ga0307507_1000072418F041673GGAMFFLGMPYRPISFLAVYKALLAGLSVGVCFYIGVAAGVTGKTWLVWVLLVVVVVCKVDV
Ga0307507_1000072423F071965AGGMTSLNFLKALLVPRCLISLIKRKLNIQTPCGTSFSVITIKTPFLSSPLISLYRESVKGVSCTRTNISAGGDCLADIPAEVR

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