Scaffold Ga0307507_10000677

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000677
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74314
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000067711	F009949	GGA	MGNAIGGKYPRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSR
Ga0307507_1000067713	F014479	N/A	VGPEGFQLLSSSVASVIEGICVFLSGDHRYARVFELLVHLGVRACSAVLPRGLYCHNLSLLKGPSCLNATAFHEVSVEFPFRLLRDF
Ga0307507_1000067715	F000247	N/A	MHIALSYKRTPRMEVAYTNYLISSSNISTGKTLVPSSSVPFTYLSTGRKPYYNSGLSLNRSIDPTSIGL
Ga0307507_1000067717	F014479	AGCAG	MTVVEGVCVFLSVAGNCRCVRVFELLVHLGVGARLAVLPRGLYCCNLLLSEGPFCLGVMAFYKVFVEFPFKLL
Ga0307507_1000067719	F000247	AGG	MQTDVMNVALSYKCTPRTEVAYTNCLAGSLNIFIDKTPVPGSGVLFAYLFTDGKLYYSGGLSLNESIDLTSTGL
Ga0307507_100006773	F056201	AGGA	MAPSRSTRLRGLNTLTRKIPYGRMPRWIIVVGVPREHLSMAYRGKEIN