Scaffold Ga0307507_10000654

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000654
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75042
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F002793	Metagenome	529	Y
F013992	Metagenome	266	Y
F024756	Metagenome	204	Y
F035578	Metagenome	171	Y
F050242	Metagenome	145	Y
F054477	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000065412	F002555	GGA	MLEIFKDEDKEEGDSITDALSIILRLLREEIEEAS
Ga0307507_1000065413	F050242	GGA	MLLCIPISTAKDIGYFSSGSKEVVYINFKLVLQLELLIIKYRVSSVCK
Ga0307507_1000065419	F054477	N/A	VSTSLGVRARANKSNSPSINWRYRLSIGIRLFFRFNIVANKEYCLTIIGSLKV
Ga0307507_1000065420	F024756	GGA	MPIYNMAHCITVGKSTSTNSLKRLILRLGSIIVVGKTEISNLYKPFLNLLL
Ga0307507_1000065421	F002793	N/A	MDITPLVNNLEILGIFKGEDKEEGDSITDALGIVL
Ga0307507_100006543	F013992	GGA	MAVIIVPYIAVNIYNYSRLVVAVANNPIGLILSRVGHRDLGICFSNKPGL
Ga0307507_100006546	F035578	GGA	VARVGDIAEGIINVNYKAIVEVLVEVYLKTINRRNAIFIRS