Scaffold Ga0307507_10000635

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000635
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76009
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Pleuroascaceae → Venustampulla → Venustampulla echinocandica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002793	Metagenome	529	Y
F017572	Metagenome	240	Y
F044237	Metagenome	154	Y
F084969	Metagenome	111	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100006351	F002793	N/A	MDIIPLVDNLKILEIFKDKNKKEGDSITDALSTVL
Ga0307507_1000063513	F102221	GAG	MAYMLKVVLPLFKVLNYSQQFLIIGIIPNFRFLEFSIIECYWSLVELGSI
Ga0307507_1000063514	F000247	AGG	VHTYTISVALSYKHIPYTEVARTNYLTSSLNIFIGKTPVPNFSALFAHPSINKKPYYNGSLSLNKSIDLTSIGL
Ga0307507_100006352	F017572	N/A	MLKPVYGNIKPLVYKADIYREREEDKWQVLKIISYKDVDNKTWYKVK
Ga0307507_100006354	F044237	N/A	MYRLNLLEKIKIYLIQHIVILELEYRNIKLLIYKVDIYRGQEEDK
Ga0307507_100006356	F084969	N/A	MPLKVPVTTLSIAATTLGLGGDTSIRDMDLQLVTVG