NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000635

Scaffold Ga0307507_10000635


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000635 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76009
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Pleuroascaceae → Venustampulla → Venustampulla echinocandica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F002793Metagenome529Y
F017572Metagenome240Y
F044237Metagenome154Y
F084969Metagenome111Y
F102221Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100006351F002793N/AMDIIPLVDNLKILEIFKDKNKKEGDSITDALSTVL
Ga0307507_1000063513F102221GAGMAYMLKVVLPLFKVLNYSQQFLIIGIIPNFRFLEFSIIECYWSLVELGSI
Ga0307507_1000063514F000247AGGVHTYTISVALSYKHIPYTEVARTNYLTSSLNIFIGKTPVPNFSALFAHPSINKKPYYNGSLSLNKSIDLTSIGL
Ga0307507_100006352F017572N/AMLKPVYGNIKPLVYKADIYREREEDKWQVLKIISYKDVDNKTWYKVK
Ga0307507_100006354F044237N/AMYRLNLLEKIKIYLIQHIVILELEYRNIKLLIYKVDIYRGQEEDK
Ga0307507_100006356F084969N/AMPLKVPVTTLSIAATTLGLGGDTSIRDMDLQLVTVG

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