NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000610

Scaffold Ga0307507_10000610


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000610 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77391
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (48.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F017572Metagenome240Y
F037003Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100006101F002793N/AMDIIPLVDNLEILGIFKDEDKEEGDGITDALSIIL
Ga0307507_1000061016F002793N/AVDITPLVDNLGILKIFKDKDKKEGDGIIDALSAML
Ga0307507_1000061017F037003AGGAMVKGETKEYAIKDAIMEETVEVKRNHLSMPAMYYLWTTPWTERAYKDIL
Ga0307507_100006105F017572N/AMLEPAHGDVKPLVYKADIYKGQEEDKWQVLKIISYKNINNKI

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