 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10000590 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 78297 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (63.33%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000630 | Metagenome | 971 | Y |
| F013992 | Metagenome | 266 | Y |
| F017572 | Metagenome | 240 | Y |
| F032490 | Metagenome | 179 | Y |
| F050242 | Metagenome | 145 | Y |
| F078050 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_1000059012 | F032490 | N/A | MPILNPQRQLILGGFNLLALALTPKGKPSSLKDYNNLNKVDINNVLSFINYTTIDK |
| Ga0307507_1000059013 | F050242 | GGA | MRLCVPTSTAKDIGHFSLSSREVVCINLKLVLQLKLLIVKYRVSSVCKQ |
| Ga0307507_1000059014 | F013992 | N/A | MAVVIVPYIAINIYSHSRLVITVADNLMGLIFSRVGYGDLSMRFSN |
| Ga0307507_1000059016 | F000630 | GAG | MGVKGIEADLGKGNLSRSMGNAIGGKYLRALRGPNKGRKYNSNTFKDRNNRTKRLALLGGYFSG |
| Ga0307507_1000059017 | F017572 | N/A | MLEPAYGNIKPPVYKAGIYRGQKEDKWEVLKIISYKDINNKIQYKVK |
| Ga0307507_1000059020 | F050242 | GGA | MRLCVPAGTAEDVGHFSSSSREVVRINFELVLQLKLLIVKHRVSSVYK |
| Ga0307507_1000059021 | F078050 | N/A | MIGIVDIKEQLDKEKQLEDLRDSIRARRKDLDKIMV |
| Ga0307507_1000059023 | F017572 | N/A | MLEPAYRDIKPLVYKADMYKGQEEDKWQVLKIISYKNVDNKT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |