Scaffold Ga0307507_10000583

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000583
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78486
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005943	Metagenome	385	Y
F015182	Metagenome	256	Y
F032886	Metagenome	178	Y
F035639	Metagenome	171	Y
F054477	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000058314	F005943	AGG	MLRNAGNGYKAYIFGESIRRCAIDRKGRGRKEVIYPRVANISCTRGVRESTGFSYGGPCGRVP
Ga0307507_1000058328	F032886	N/A	MELEYLLISSNKKENKANWEYLYLNNVIEAETKTTIERGLVIGIITPLDTASIAL
Ga0307507_1000058329	F035639	GAGG	MVDRLLNNNRILKERINRIGAVKVKLLLIKQFLGERLKLKEFLT
Ga0307507_100005833	F015182	GGCGG	VTKVISNFFKKVFLVFSIVLGKNSSIFLEFNIELIK
Ga0307507_1000058331	F054477	N/A	VSTSLGVKARANKLNSSGIDWRYRLSIDIRLFFRFNIVASKEYCLTIIGSLKV
Ga0307507_100005839	F015182	N/A	VAGGCVTKAISDFFKEIFLVFSVVLGKNSGVFLEFNIELVK