Scaffold Ga0307507_10000581

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000581
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78539
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F003725	Metagenome	471	Y
F004318	Metagenome / Metatranscriptome	443	Y
F015182	Metagenome	256	Y
F026200	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000058111	F003725	N/A	METLINLYTDLKEIAKMVQQRMKRYYNAKRSKGPDLKEGDKV
Ga0307507_1000058120	F000247	N/A	MMRVALNYKRTLYIEVARTSYLASSLNIFIGKTPVPSSGVPFTHLFINKKLYYNSGLSLNKSIDLISTGL
Ga0307507_1000058121	F026200	N/A	MLVHLFIIYIKNLFKFPLVCDVAIIISFGYPFCDIMTFLFINACLTRDLFREPKADF
Ga0307507_1000058124	F015182	N/A	MNIIVVIASGCVTKAISNFFKEIFLVFSIVLGEGSGVFLEFNIELVK
Ga0307507_1000058130	F004318	AGGAG	MWIFKALSGLRLSLVSYTVSYSVLGSVLDTELVLDLGSGSLSIFFMVEY