Scaffold Ga0307507_10000578

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000578
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78652
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F015315	Metagenome	255	Y
F061416	Metagenome	131	Y
F093556	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000057812	F015315	AGGAG	MDLATEGNNIGIYKACIKDANSLKNLTLPPLFGESNGLDLGPIPSFLPILTAVEKLLIARVYVYLQVVRIRGQ
Ga0307507_1000057814	F093556	AGTAG	MAYPTAPIQHPPNINPLPTELGSNILDSEFNNNVLDTLVPNLVPNLNKLELLGHEV
Ga0307507_1000057832	F061416	AGG	MHFKVVQEGVKLATPTDQVAYIGLFLTGKVLKWFKPYLTKIQVNGIITANQDIWYMFTS
Ga0307507_1000057833	F003725	N/A	MENLINLYNYLKRIEKLVQTRIKRYYNAKRSKGLDLKEGDKV