Scaffold Ga0307507_10000568

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000568
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79272
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002555	Metagenome	548	Y
F007022	Metagenome	359	Y
F064296	Metagenome	128	Y
F064575	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000056816	F000630	GAG	MGVKGIEANLGKRNLSYSIVNAIGGKYLRALRRPNKGRKYNSNTFKNRDNRTKRLALLGRYSSRQPKMQI
Ga0307507_1000056819	F002555	GGA	MLGIFKDKDKKEGDSITDALSMMLQLLREETAEAS
Ga0307507_1000056823	F064575	N/A	MILTNLRKPTMAPKASLSKRSASTREEHEVQLGLEIKDNDDVTGVYKQICALIAN
Ga0307507_1000056824	F007022	N/A	MVMCFNYRKDGYFTTSCLELKDISDIKEIEEEETPNKLGKEEP
Ga0307507_1000056825	F064296	AGG	MYWKDNKVFITSLYKIDRIINKKEEGPVEETDKELVKRLFPIYLLDHRDAFLKVALDMLPPY