Scaffold Ga0307507_10000558

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000558
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79836
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F032105	Metagenome	180	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000055812	F002555	GGA	MLGIFKDKDKEEGDGVIDSLSTMLRLLGEELEEAS
Ga0307507_100005585	F078226	N/A	MLDTNADKNTNNDNSKEELEDPNSYYLILFGTLTIDEVTSISIELANKACAYLLTATSMEPTTEINPFNYNTTTAALRYTSTVFIGIIINTGALKKSTAGYR
Ga0307507_100005586	F032105	GGA	MDAITTTKVPQLKPVRIIDILKGNVLSPTIMADKVLLKTIKVTISNCLIYMPEVAKLFFKPLPLPLIEPY