NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000558

Scaffold Ga0307507_10000558


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000558 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79836
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F032105Metagenome180Y
F078226Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000055812F002555GGAMLGIFKDKDKEEGDGVIDSLSTMLRLLGEELEEAS
Ga0307507_100005585F078226N/AMLDTNADKNTNNDNSKEELEDPNSYYLILFGTLTIDEVTSISIELANKACAYLLTATSMEPTTEINPFNYNTTTAALRYTSTVFIGIIINTGALKKSTAGYR
Ga0307507_100005586F032105GGAMDAITTTKVPQLKPVRIIDILKGNVLSPTIMADKVLLKTIKVTISNCLIYMPEVAKLFFKPLPLPLIEPY

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