NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000551

Scaffold Ga0307507_10000551


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000551 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80221
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000746Metagenome908Y
F004318Metagenome / Metatranscriptome443Y
F006298Metagenome376Y
F007161Metagenome356Y
F016500Metagenome246Y
F064296Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000055110F006298N/AMERRLVIKNSNGLYAIYLAILSKVLVGRVVLNFYIYKELFGLINLTLKIFYAFILNQEALKVGYSNLIISNVSCTLVKLIICLLLLIKRMPS
Ga0307507_1000055112F004318N/AVLSELRLSLVSYIVSYLVLGLVLGIELILDLGLGFLSILFIVEY
Ga0307507_100005512F007161AGTAGVPYYLVNRYKSDRGIVLKLGLKVPLGVPYSSTKEVKHFGFFRKEIVIINAELSLYLNPPIFKGRVYPIRQ
Ga0307507_100005514F064296N/AMYRRDNEVFITSLYKINRIIAEREEEPAKETNKELVKRLLFTIYAGYKDVFLKVALDKLPPY
Ga0307507_100005515F016500AGGLGKSYKRLCYYSIVIDKTAIEVAEVKKGLDPLYSARGFLVMDYFNLLRVNFNSFYTNNKPKVLYSFYPKLIFLNIDL
Ga0307507_100005519F000746GGAVAVVGNTAEGIINNYKAKVEVLIEVYSKVIIRRSATFIRNQIAS
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