Scaffold Ga0307507_10000550

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000550
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80283
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F006298	Metagenome	376	Y
F024756	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100005502	F000746	GGA	MVAVVGNIVKGTINVNYKAIMEVLMEVYFKVIARRSTIFIKS
Ga0307507_1000055021	F000746	N/A	MIITGLTKYIVAVVGNTAKGTINVDYKAIMEVLVEVYFKVIARRSATFIRS
Ga0307507_100005506	F006298	N/A	MERRLVIKNSNGLYTIYLTILSKVLVGRVVLNFHIYKKLFGLVNLTLKIFFAFILNQEALEVGCSNFLVFNVLCALAKLIIYLLLSIKGVSS
Ga0307507_100005507	F002220	AGG	MHPLKSNGIVKLSFSFSFAMRFAFTSLSSLRAKNWSSPKIIILLVYMPTILNRVPVVIIRKQGLNVEVVIKSFSL
Ga0307507_100005509	F024756	GGA	MPIYSMAYYIIVGESAGTNSLKHLMSRLGFIIVVGKMEASNLYKTFLDLLL