Scaffold Ga0307507_10000536

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000536
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80727
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003457	Metagenome	485	Y
F050242	Metagenome	145	Y
F054477	Metagenome	139	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000053610	F054477	N/A	VSISLGVKARANKLNSPGIDWRCRLSVGIRLFFRFNIVASKEYRLTIVGSLEV
Ga0307507_100005366	F050242	GGA	MYLYIPTSMAKDVGHFSLSSREVVRINFKLILQLKLPIIKHRVSSVRKQ
Ga0307507_100005368	F003457	GGTGG	MAGLVCFFSAKAFLILAIVTAKIIYLGFLASHTNRVAPIMWIFKVLSKLGLSLISYIVSYSGLSLVLGIESVLDLGSGSLSIFFIVEY
Ga0307507_100005369	F091119	AGG	VVKRRNVMSWDGGSGYKAYVFEESTRRCAIDRKGRGRKEVIYLRVANISYT