NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000531

Scaffold Ga0307507_10000531


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000531 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80933
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (67.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F000746Metagenome908Y
F002220Metagenome581Y
F003725Metagenome471Y
F006298Metagenome376Y
F027375Metagenome194Y
F064278Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000053115F002220GAGMHLLKSNSVVKLSFSFGFAIRFTFTSSSFLRAENWLSPKIIILLVYIPMILNGVPVVIIRKQGLNIEVVIKSFSL
Ga0307507_1000053118F006298N/AMEHRLVIKNSDGLYTIYLTILSKVLVRRVVLNFYIYKELFNLINLTLKVFYAFILNQEALEVGCSDFIISNISYTLTELVICLFSLIKGVSS
Ga0307507_1000053119F000746GGAMVAVVGNTEEGIINVNYKATVKVLVEVHFKVITRKSATFIRSQSAS
Ga0307507_1000053122F003725GGAGMNLYIDLKETAKLVQERMKRYYNAKRSEGPDLKEGDKV
Ga0307507_1000053127F000630GAGGMGVKGTKANLGKRNLSYSMVNTIGGKHLRALRKPNKGRKYNSNTFKNRNNRTKRLALLGGCSSR
Ga0307507_1000053130F064278N/AMPLVNTYRNTLINSAIVICFNYGKDSYFTIYCLELKDIGNIKKIEKEETSNKLEKEEP
Ga0307507_100005314F027375N/AMVPLLDTIPLSVLNKSYRSKNRSASSAAVIVIITVKYPKNFVYLLTVTRIALAASPILILVGGKPIIKSIVNSNIGPYRIGSTNNSLYRRYLDIYTL
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