Scaffold Ga0307507_10000527

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000527
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81027
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002555	Metagenome	548	Y
F007022	Metagenome	359	Y
F060493	Metagenome	132	Y
F064533	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100005271	F000630	GGAG	MGVKGTEVDLGKGNPSYSIGNTIGGKYLRAPRGPNKGRKYNSNTLKNRNNRTKRLALLGGYPSR
Ga0307507_1000052711	F064533	N/A	MGSPICPLYPQIGISLGSFLRGAFKKLASFIVYCVSIKAKVFALESAKAEIKT
Ga0307507_1000052714	F007022	N/A	MVTCFNYGKDSYSTISCLELKDIGNIKKIKEEEISNKLEKEKP
Ga0307507_100005272	F060493	N/A	MRKDFIVLMLSLDISGAYNNIPYKRLLYILRAKDFPE
Ga0307507_100005276	F000630	GAG	MGVKGTEADLGKGDPSRSIGNAMGGKYLRAPRGPNKGRKYNGNTLKNRNNRTKRLASLGGCPSG
Ga0307507_100005277	F002555	GGA	MLGIFKDEDKEEGDSITDALSTILQLLGEELAEAS