 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10000519 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81475 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (27.59%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000630 | Metagenome | 971 | Y |
| F004318 | Metagenome / Metatranscriptome | 443 | Y |
| F005943 | Metagenome | 385 | Y |
| F017572 | Metagenome | 240 | Y |
| F032490 | Metagenome | 179 | Y |
| F060493 | Metagenome | 132 | Y |
| F082146 | Metagenome | 113 | Y |
| F096350 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_1000051911 | F096350 | N/A | MAGLVCFFSTKAFLISAIVTVKIIYLGFLASYANRVALII |
| Ga0307507_1000051912 | F004318 | N/A | VLSEFRLFLVSYIVSYLGLSLVLGTELVLDLGLGSLSILFIVEY |
| Ga0307507_1000051916 | F017572 | N/A | MLEPARRNVKLLVYKADMYRGQEEDKWQVLKIISYKDIDGKIWYKVK |
| Ga0307507_1000051925 | F000630 | GAG | MGVKGTEAILGKRNLSRSIVNTIGGKYLRAPKRPNKGGKYNGNTLKNRNNRTKRLALLGGCPSR |
| Ga0307507_1000051926 | F032490 | N/A | MLNLKNNLIPILNLQRQLILGGFNLLTIALTPKGKPSGLKDYNNLNKVDINNILSFINYITTDK |
| Ga0307507_1000051927 | F005943 | AGG | MSRDGGNGYRTYVFGESTRRYAIDRKGRGRKEVIYLRVADVSCTRGIRESTGLSYRGPYGGVPXQESSITYFSN |
| Ga0307507_100005198 | F082146 | N/A | MFYISLLYPLKDKPITHEVPPLPPVIINNGNGSYFINLINNMR |
| Ga0307507_100005199 | F060493 | N/A | MRRDFIVLILSLDISGAYNNIPYKRLLYILRAKGFLEQII |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |