Scaffold Ga0307507_10000497

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000497
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83045
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (56.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F038017	Metagenome	166	Y
F056213	Metagenome	137	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000049720	F002555	AGTAG	MLGIFKDKDKEEGDSITDALSTMLQLLKKELAEAS
Ga0307507_1000049721	F038017	GAG	VVRLTRYRFKLKDKDKLKVNLKHIAYYILLWIACVDNIYNIYRALKNKNRKYLVRIY
Ga0307507_1000049723	F096350	N/A	MVGLVYFFSTKAFLISAIITVKIVYLGFLVSFASGVALII
Ga0307507_1000049724	F056213	N/A	VGLGIRRSILLYRLLIIFTQTLRAPSRSISIREVFSLGLRDLIRLLISAELF