Scaffold Ga0307507_10000496

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000496
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83081
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F009949	Metagenome	310	Y
F015315	Metagenome	255	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F038017	Metagenome	166	Y
F041034	Metagenome	160	Y
F053802	Metagenome	140	Y
F096933	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000049619	F041034	N/A	VEFGGILGLVELGGLFRYRVDISRNFRLVDLGGFFRFWFRV
Ga0307507_1000049620	F021494	GAG	VSYIPTSASIFKSVIISSSSPILTSWLYTLYGSAINIIFTALNLILNYPGLKLTIAIYGGLSIGRSLPCVPYDPYIPI
Ga0307507_1000049621	F020829	AGTAGG	MPLVSSKLITNIIFSVYRTPLTLGLYTLMIYTGPLYIWIVITTISRLTACYNYKDRLIALLIIKHTRIAAFGLYRS
Ga0307507_1000049622	F009949	AGGA	MVNAIGGKHSRALKRPNKGRKYNSNTFKNRNNRTKRLALLGRGPSK
Ga0307507_1000049624	F096933	AGG	VHVIIIVTSGSVTKAIGDLFKEIFLVFSVVLGEDSSVFLELNIELVE
Ga0307507_1000049629	F015315	AGGAG	MGLATEGDNIGVYKAYVKDANSLKDPALPPLFSKSNGLDLGPIPSFLPILTAVEELLIARVYVYLQVVRIRSQQHRYTGYVCCFSQNTLKT
Ga0307507_1000049635	F038017	GGA	VVRLTGYRFKLKNKNKLRVNLKHIAYYILLWIAYVDNIYNMHRVPKDKNRKYLVRIY
Ga0307507_1000049637	F000746	N/A	MIITRLIEYMVAIVGNTTEGTINVNYKAIVEVLMEVHFEVIARRSAIFARSQITG
Ga0307507_1000049638	F002220	N/A	MESLFRERMHLLKSNSVVKLSFSFGFTIRFAFTSLSSLRAKNWLSPKIIILSVCMPTIPNGIPVVVIRKQGLNIEVVIKSFSL
Ga0307507_1000049639	F053802	N/A	VDSGAIRNYILLIVVKRIGLLHRQSKYLYPLITILGDLIAYREGIINLKIGPI
Ga0307507_100004968	F000630	N/A	MLERQIGVKGTEVDLGKGNLSHSIGNTMGGKYLRALRGPNKGRKYNSNTLKDRNNRTKKLALLGRCPSR