Scaffold Ga0307507_10000495

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000495
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83223
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (51.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F005943	Metagenome	385	Y
F007022	Metagenome	359	Y
F015182	Metagenome	256	Y
F056213	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000049512	F005943	AGG	MSRNAGNGYKAYVFGESTRRCAIDRKDQGRKEVIYPRVADISCTRGVRKSTGFSYRGPYGRVP
Ga0307507_1000049514	F015182	GGCGG	VTKAISNFFKEIFLVFSVVLGEDSGVFLEFNIELIK
Ga0307507_1000049517	F005943	GGA	VSQNAGNGYKAYVFGESTRRCAIDRKDRGRKEVIYPRVADISCTRGVRESTGFSYGGPCGRVP
Ga0307507_1000049519	F000247	N/A	MNNNIINITLSYKCTLYTEVAYTNYLTSSLNIFIGKTLVPSFSVLFTYPFIDKKLYYNGGLSLNKSINLTSTSL
Ga0307507_1000049534	F007022	N/A	MVTCFNCGKDSYFTISCPELKDIGNIKEIEEEEMSNKLGKEEP
Ga0307507_100004957	F056213	N/A	VDFGVRRSILLYCLLITFTQALRAPSRSIPIREVFSLGLRDLMRLLTSAESFQPISFV