Scaffold Ga0307507_10000491

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000491
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83578
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F003725	Metagenome	471	Y
F006298	Metagenome	376	Y
F019458	Metagenome	229	Y
F061416	Metagenome	131	Y
F061712	Metagenome	131	Y
F064575	Metagenome	128	Y
F074608	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000049115	F000746	N/A	MITTRLTIYIVAVVGNTAKGIINVNYKAIIEVLIEVYFKVIARRSTMFVRS
Ga0307507_1000049116	F006298	N/A	MERRLVIKNSNGLYAIYLTILSKVLVRRVVLNFYIYKELFNLINLTLKIFYAFILNQEALKVGRSNLIIFNVSCTLTELIICLLLLIKGVSS
Ga0307507_1000049117	F064575	AGGA	MAPKASLSKRAAPTQEEHEIQLGSEIEDNNNSIDIHKQIRALTAN
Ga0307507_1000049119	F019458	N/A	MLYFITKSDIFNEPKESSAFSFNNRYLANVFYGIIPDTRAAGVSIVGEPQVRAL
Ga0307507_1000049123	F074608	N/A	MERRLVIKNSNGLYAIYLTILSKVLVRRVVLNFYIYKELFSLINLTLKVFYAFILN
Ga0307507_1000049124	F000746	GGA	MVAVVGNIKEGTININYKATVEVLVEVHFKVIARRSTTFIKSQITS
Ga0307507_1000049127	F000630	GGAG	MGVKGIEVDLGKGNPSRSIGNTMGGKYLRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSR
Ga0307507_1000049128	F061712	AGGA	LLSIAYSTILVVHYIRIVALKITGFPIIITRRVKVVGFKITGLTIAVIKLRSFLKRIISVYIVNKQIEMAF
Ga0307507_100004915	F061416	AGG	MYFKVMQKGAKLATPTNQVVYAGLFLLGRALEWFKPYLTEI
Ga0307507_100004918	F003725	N/A	MLINLYIDLMETAKLVQQRIKRYYDTKRSKGPDLKEGDKVWLLHKNFKS