NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000484

Scaffold Ga0307507_10000484


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000484 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83870
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F009949Metagenome310Y
F050927Metagenome144Y
F094694Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000048419F094694AGCAGGVVSILKVGLIYIVYKVLSKYIYLLTLTCIVAVINFIGKSKY
Ga0307507_1000048423F002220AGGMYLLKSNSVIKLSFSFSFTIRFAFTSLSSLRAKNWSSPKIIILLVCMPIILNGVPIVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000048425F009949N/AVNAIGGKHLRALKRPNKGRKYNSNTLKNRNNRTKRLALLGRYSSR
Ga0307507_100004845F000630GAGMGVKGTEVDLGKGNLSHSIGNAIGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLALLGRYFSG
Ga0307507_100004846F050927N/AMPEYPATRKEGSAYFIYKATPLLSIDVDKKIVREVINWYMLKVSNTHAEYMLYLYI

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