Scaffold Ga0307507_10000470

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000470
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84661
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (34.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F006298	Metagenome	376	Y
F007022	Metagenome	359	Y
F019457	Metagenome	229	Y
F050242	Metagenome	145	Y
F078050	Metagenome / Metatranscriptome	116	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000047010	F006298	N/A	MERRLVIKNSDGLYTIYLTILSEVLVRRVVLNFYIYKELFSLINLTLKIFYAFILNQEALEVGYSNLIIFNVSCTLTKLVIYLLLLIKGVSS
Ga0307507_1000047014	F007022	N/A	MYFNYSKDSYFILSCLELKDIGNIKEIKEEEMSNKLGKKEL
Ga0307507_1000047016	F000746	GGA	MVAVVGNTAKGIINVNYKAIMEVIMEVHFKVIAKRSAIFIRSQIAG
Ga0307507_1000047022	F050242	GGA	MRLYIPTSTAEDIGHFSLGSREVVYINFKFILQLKLPIIKYRVSSVCKQ
Ga0307507_1000047026	F096350	N/A	MAGLVCFFSARAFLISAIITVKIVYLGFLASYTNGVALII
Ga0307507_100004707	F078050	N/A	MIGMVDIKERLNKEKQLEDLRDSIRARQKDLDEIMVQLTYXRIXEGG
Ga0307507_100004708	F019457	GGA	MQTNNIIILGDNQFLALKENKLVKVNLIAKLKEKLNLTTLLLFNRCTLSLNKDSIALR