Scaffold Ga0307507_10000460

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000460
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85190
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F024756	Metagenome	204	Y
F032490	Metagenome	179	Y
F041034	Metagenome	160	Y
F053802	Metagenome	140	Y
F084969	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000046012	F024756	GGA	MSIYSIVHYTIVGKSASTNSLKHLILCLESIIAAGEIEARNLYKTFLDLLL
Ga0307507_1000046014	F084969	GAG	MLLKALVIMLSTAATTLGTLGGDTSIRDTNSQLVTVG
Ga0307507_1000046017	F000746	GGA	MVAVVGNTEEGIINVNYKATVEVLIEVHFKVIARRSAMFIRS
Ga0307507_100004602	F041034	GAG	MWFSIISRFLVDIGGILMLVEFGGILRLVELGGLFRYRMDVSRNFRLVDPSGFFKFWFRV
Ga0307507_1000046020	F053802	N/A	VLVDSRVIRNYILLTAVKRVGLLYRQKEYLYPLIIILGDLIAYKGGIINLKTGPI
Ga0307507_1000046021	F032490	N/A	MPILNLRRQLILGGFDLLALALTPKGKPSSLKDYNNLNKVDINNVLFFINYITIDK