Scaffold Ga0307507_10000428

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000428
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87642
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F005943	Metagenome	385	Y
F006298	Metagenome	376	Y
F009949	Metagenome	310	Y
F015182	Metagenome	256	Y
F035578	Metagenome	171	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000042810	F000746	N/A	MITTGLIKYMVAVVGNTEEGIINVDYKATVEVLIEVYFEVIARRSAIFVRSQSAS
Ga0307507_1000042811	F009949	AGG	MGGKYLRALRGPNKGRKYNSNTFKDRNNRTKRLALLGGCPSR
Ga0307507_1000042813	F002220	AGGAG	VHLLKSNSIIKLSFSFSFTIRFAFTNLSSLRAENWLSPKIIILLVCMPMILNRVPIVIIRKHRLNIKVVIKSFSL
Ga0307507_1000042815	F081096	N/A	MYIYRGGYRGNIGQLDKDLTVRDTGQLIKGGDTSLVSRRGESRLFSVKPSISIAPLL
Ga0307507_1000042823	F000247	AGG	VCTYIICITLNYKYTPRIEVAYTNCLASSLNISISKTPVPSSGVLFIRLFINRKLYYNSGLSLNKSIDLTSTSL
Ga0307507_1000042827	F035578	N/A	MVARVGDTAEGIININYKAIVEVLMEVYLKTINRRNAIFVRS
Ga0307507_1000042828	F006298	N/A	MERRLVIKNSNSLYTIYLTILSKVLVGRVVLNFHIYKKLFGLINLTLKIFFAFILNQKALEVGYSNLTISNILYALVKLIICLFLSVKRVPS
Ga0307507_1000042829	F002220	AGG	MHPLKSNSVIKLSFSFSFAIRFVFTSLSSLRAKNWLSPKIIILSVYMLTIPNRVPIVVIRKQGLNIKVVIKSFFL
Ga0307507_100004285	F015182	AGG	VNVIIVVAGGCVTKVISDFFKEIFLVFSVVLGEDSGVFLEFNIELVK
Ga0307507_100004288	F005943	N/A	VVLIKLIKLLRNAGNSYKAYIFRESTRHYAINRKDQGRKEVIYPRVANISCTQGVYKSTGFSYRGPYSWVP
Ga0307507_100004289	F002220	AGG	MHPLKSNSIIKLSFSFSFTIRFAFTSSSSLRAKNWSSPKIIILLVYMLMIPNRVPIVIIRKQGLNIEVVIKSFSL