Scaffold Ga0307507_10000420

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000420
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88525
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F003457	Metagenome	485	Y
F078050	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000042010	F000630	N/A	MLERYIGVKGTEANLGKRNLSYSIVNAIGGKYLRAPRRPNKGRKYNGNTLKNRDNRTKRLALLGRYPSR
Ga0307507_1000042015	F003457	AGTAGG	VCFFSAKAFLISAIVIVKIVCLGFLVSCANRVALIMWIFKVLSELKLSLVSYIVSCLGLSLVLGTELVLNLGLGSLSILFIVEY
Ga0307507_100004202	F002220	AGG	MHPLKSNSVVKLSFSFGFTIRFAFTSLSSLRAKNWLSPKIIILSVYILIILNRVPIVVIKKHRLNIKVVIKSFSL
Ga0307507_1000042025	F078050	N/A	VDIKEWLNKEKQLKDLREKVRARRKDLDDIMVQLTH
Ga0307507_100004205	F000630	GAG	MGVKGIEANLGKRNPSYSIVNAIRGKHLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSRQPKMRI