Scaffold Ga0307507_10000404

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000404
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89817
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F014479	Metagenome / Metatranscriptome	262	Y
F071965	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000040410	F000630	GGAG	MGVKGTEVDLGKGNPSYSMGNIMGGKYLRAPRGPNKDRKYNGNTLKDRNNRTKRLALLGGCPSR
Ga0307507_1000040412	F014479	N/A	VGLEGFQLLSSSIITVIEGVCVFLSVASNYRYARVFKLLVHLGVGACLAVLPRGLYCHNLLLLEGPSCLSAMAFYKVFIEFLFRSSRDFKGGW
Ga0307507_1000040413	F000247	AGG	VQTNIINVALSYKRTLYTEVAHTNYLASSLNTFVDKTLVPSSSVLFTYLSINGKLYYSGGLSLNKSIDLTSTGL
Ga0307507_1000040420	F000247	N/A	MYIVLSYKRTPRTKVAYTNCLASSLNIFIDITLVPSSGVLFAYLSINKKPYYNGGLSLNKSIDLTSTGL
Ga0307507_100004049	F071965	N/A	MKRELNIRTPCGTSLSITTAKTPFLSSPLISLYCESVKGGSYTRTDISVGRGCLADVPTEVR